RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g48350.1 View Network Show in Genome Browser |
| Other Names | Os04g0572400 |
| Description | dehydration-responsive element-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28820861-28821913 Nucleotide Length: 660 |
| Protein-coding | LOC_Os04g48350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18870 LOC_Os02g44870 LOC_Os03g17660 LOC_Os03g53960 LOC_Os04g44650 LOC_Os02g42570 LOC_Os02g54050 LOC_Os04g34230 LOC_Os02g27030 LOC_Os03g18890 LOC_Os02g10190 More.. |
| Downstream Genes | LOC_Os07g44180 LOC_Os05g49170 LOC_Os12g24580 LOC_Os10g30290 LOC_Os05g02060 LOC_Os09g25090 LOC_Os06g44190 LOC_Os11g47730 LOC_Os05g13580 LOC_Os07g41600 LOC_Os12g35670 More.. |
| Reference | |
|---|---|
| PubMed | 23077584 18779926 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g48350.1 |
| Rice Genome Annotation | LOC_Os04g48350.1 |
| Ricechip | LOC_Os04g48350.1 |
| KEGG | osa:4336721 dosa:Os04t0572400-00 |
| Entrez-Gene | 4336721 |