RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g48380.1 View Network Show in Genome Browser |
| Other Names | Os04g0572800 |
| Description | lysM domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28854056-28854955 Nucleotide Length: 360 |
| Protein-coding | LOC_Os04g48380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g03450 LOC_Os01g40860 LOC_Os01g37850 LOC_Os03g20630 LOC_Os03g05520 LOC_Os02g44510 LOC_Os02g06670 LOC_Os04g08828 LOC_Os03g37290 LOC_Os02g08180 LOC_Os01g38510 More.. |
| Downstream Genes | LOC_Os05g04170 LOC_Os08g17680 LOC_Os08g34258 LOC_Os08g34249 LOC_Os07g12890 LOC_Os07g42960 LOC_Os09g19734 LOC_Os06g39260 LOC_Os09g20090 LOC_Os05g23260 LOC_Os09g27830 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1439 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g48380.1 |
| Rice Genome Annotation | LOC_Os04g48380.1 |
| Ricechip | LOC_Os04g48380.1 |
| KEGG | dosa:Os04t0572800-00 |