RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g48700.1 View Network Show in Genome Browser |
| Other Names | Os04g0576300 |
| Description | TruB family pseudouridylate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 29032369-29036174 Nucleotide Length: 867 |
| Protein-coding | LOC_Os04g48700 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g55940 LOC_Os02g40460 LOC_Os03g10370 LOC_Os01g40170 LOC_Os01g40150 LOC_Os02g49980 LOC_Os03g63720 LOC_Os03g58710 LOC_Os03g62720 LOC_Os03g27450 LOC_Os01g51390 More.. |
| Downstream Genes | LOC_Os06g04610 LOC_Os09g34010 LOC_Os05g49970 LOC_Os06g07896 LOC_Os07g07310 LOC_Os12g31880 LOC_Os05g51500 LOC_Os12g34550 LOC_Os12g21500 LOC_Os08g02360 LOC_Os12g10580 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g48700.1 |
| Rice Genome Annotation | LOC_Os04g48700.1 |
| Ricechip | LOC_Os04g48700.1 |
| KEGG | osa:4336736 dosa:Os04t0576300-01 |
| Entrez-Gene | 4336736 |