RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g49194.1 View Network Show in Genome Browser |
| Other Names | Os04g0581000 |
| Description | naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 29331563-29338265 Nucleotide Length: 1023 |
| Protein-coding | LOC_Os04g49194 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g58580 LOC_Os02g36940 LOC_Os02g38230 LOC_Os02g36950 LOC_Os02g37940 LOC_Os01g71400 LOC_Os01g67054 LOC_Os03g01180 LOC_Os01g58730 LOC_Os03g51430 LOC_Os03g30790 More.. |
| Downstream Genes | LOC_Os06g05520 LOC_Os09g37600 LOC_Os09g27830 LOC_Os06g06180 LOC_Os06g19690 LOC_Os10g38930 LOC_Os09g29370 LOC_Os08g17680 LOC_Os05g44360 LOC_Os11g37920 LOC_Os04g50790 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6256 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g49194.1 |
| Rice Genome Annotation | LOC_Os04g49194.1 |
| Ricechip | LOC_Os04g49194.1 |
| KEGG | osa:4336764 dosa:Os04t0581000-01 |
| Entrez-Gene | 4336764 |