RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g49530.1 View Network Show in Genome Browser |
| Other Names | Os04g0584800 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 29538734-29542566 Nucleotide Length: 1257 |
| Protein-coding | LOC_Os04g49530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g15690 LOC_Os01g68598 LOC_Os03g51510 LOC_Os02g22140 LOC_Os01g43680 LOC_Os03g44500 LOC_Os04g48170 LOC_Os01g06600 LOC_Os01g59600 LOC_Os02g38120 LOC_Os03g05740 More.. |
| Downstream Genes | LOC_Os09g37020 LOC_Os06g37590 LOC_Os09g05020 LOC_Os05g42120 LOC_Os04g53220 LOC_Os04g51690 LOC_Os12g01260 LOC_Os11g01300 LOC_Os12g15420 LOC_Os06g13010 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5544 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g49530.1 |
| Rice Genome Annotation | LOC_Os04g49530.1 |
| Ricechip | LOC_Os04g49530.1 |
| KEGG | osa:4336785 dosa:Os04t0584800-01 |
| Entrez-Gene | 4336785 |