RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g49960.1 View Network Show in Genome Browser |
| Other Names | Os04g0589600 |
| Description | glycosyl transferase, group 1 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 29803050-29806037 Nucleotide Length: 1257 |
| Protein-coding | LOC_Os04g49960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08300 LOC_Os04g34000 LOC_Os03g11560 LOC_Os01g46430 LOC_Os01g43380 LOC_Os01g62840 LOC_Os03g16150 LOC_Os03g02440 LOC_Os03g57870 LOC_Os03g60939 LOC_Os03g29460 More.. |
| Downstream Genes | LOC_Os07g16960 LOC_Os06g36890 LOC_Os11g04480 LOC_Os12g04240 LOC_Os08g20660 LOC_Os07g01030 LOC_Os10g30156 LOC_Os06g06560 LOC_Os08g13930 LOC_Os07g46640 LOC_Os05g38530 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00510 rn00513 rn01100 |
| Metacyc Pathways | MANNOSYL-CHITO-DOLICHOLBIOSYNTHESIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g49960.1 |
| Rice Genome Annotation | LOC_Os04g49960.1 |
| Ricechip | LOC_Os04g49960.1 |
| KEGG | osa:4336813 dosa:Os04t0589600-01 |
| Entrez-Gene | 4336813 |