RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g50720.1 View Network Show in Genome Browser |
| Other Names | Os04g0593600 |
| Description | ara54-like RING finger protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30006879-30011384 Nucleotide Length: 1890 |
| Protein-coding | LOC_Os04g50720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g37770 LOC_Os04g41510 LOC_Os03g34300 LOC_Os03g49580 LOC_Os01g71270 LOC_Os02g54990 LOC_Os01g63980 |
| Downstream Genes | LOC_Os11g35870 LOC_Os09g13680 LOC_Os06g40960 LOC_Os07g39870 LOC_Os08g39390 LOC_Os09g10980 LOC_Os05g31020 LOC_Os05g37190 LOC_Os06g19680 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5519 osa-miR1866-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g50720.1 |
| Rice Genome Annotation | LOC_Os04g50720.1 |
| Ricechip | LOC_Os04g50720.1 |
| KEGG | osa:4336837 dosa:Os04t0593600-01 |
| Entrez-Gene | 4336837 |