RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g50864.1 View Network Show in Genome Browser |
| Other Names | Os04g0596400 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30081062-30084230 Nucleotide Length: 477 |
| Protein-coding | LOC_Os04g50864 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g52170 LOC_Os02g47140 LOC_Os03g53750 LOC_Os03g57870 LOC_Os01g73310 LOC_Os04g35090 LOC_Os02g34460 LOC_Os03g61970 LOC_Os01g64630 LOC_Os03g37970 LOC_Os02g53060 More.. |
| Downstream Genes | LOC_Os07g14830 LOC_Os12g40130 LOC_Os04g50990 LOC_Os05g01600 LOC_Os11g06390 LOC_Os10g36650 LOC_Os06g42000 LOC_Os06g04800 LOC_Os05g36290 LOC_Os07g25420 LOC_Os06g02510 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 osa-miR172d-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g50864.1 |
| Rice Genome Annotation | LOC_Os04g50864.1 |
| Ricechip | LOC_Os04g50864.1 |
| KEGG | dosa:Os04t0596400-01 |