RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g50890.1 View Network Show in Genome Browser |
| Other Names | Os04g0597000 |
| Description | secretory carrier-associated membrane protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30109971-30113663 Nucleotide Length: 822 |
| Protein-coding | LOC_Os04g50890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g46620 LOC_Os03g22950 LOC_Os02g47420 LOC_Os02g05310 LOC_Os01g57220 LOC_Os03g11060 LOC_Os02g32740 LOC_Os02g39890 LOC_Os03g38590 LOC_Os01g51300 LOC_Os03g43890 More.. |
| Downstream Genes | LOC_Os10g23204 LOC_Os07g37740 LOC_Os05g45930 LOC_Os05g42330 LOC_Os08g33120 LOC_Os06g50000 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5819 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g50890.1 |
| Rice Genome Annotation | LOC_Os04g50890.1 |
| Ricechip | LOC_Os04g50890.1 |
| KEGG | dosa:Os04t0597000-01 |