RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g51300.1 View Network Show in Genome Browser
Other Names	Os04g0602100
Description	peroxidase precursor, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 30385512-30388837 Nucleotide Length: 1062
Protein-coding	LOC_Os04g51300

Gene Ontology Classification
GO	Name	Type	Code
GO:0008152	metabolic process	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0009536	plastid	Cellular Component	IEA
GO:0009579	thylakoid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g08510 LOC_Os01g70400 LOC_Os02g33450 LOC_Os02g58790 LOC_Os02g17920 LOC_Os02g51470 LOC_Os01g55570 LOC_Os02g50620 LOC_Os03g10060 LOC_Os01g59090 LOC_Os01g48680 More..
Downstream Genes	LOC_Os10g01044 LOC_Os04g53490 LOC_Os07g28610 LOC_Os08g29370 LOC_Os10g37180 LOC_Os10g35810 LOC_Os09g36680 LOC_Os09g10750 LOC_Os10g10180 LOC_Os05g08790 LOC_Os09g34140 More..

miRNA Regulations
miRNAs	osa-miR2925

Pathways
KEGG Pathways	rn00053 rn00480
Metacyc Pathways	PWY-5461 PWY-2261

Database Links
Gramene	LOC_Os04g51300.1
Rice Genome Annotation	LOC_Os04g51300.1
Ricechip	LOC_Os04g51300.1
KEGG	osa:4336886 dosa:Os04t0602100-01
Entrez-Gene	4336886