RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g51320.1 View Network Show in Genome Browser |
| Other Names | Os04g0602300 |
| Description | transcription factor TF2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30393182-30395776 Nucleotide Length: 834 |
| Protein-coding | LOC_Os04g51320 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02710 LOC_Os02g21880 LOC_Os01g65520 LOC_Os04g50990 LOC_Os02g47140 LOC_Os02g48660 |
| Downstream Genes | LOC_Os05g03740 LOC_Os06g05240 LOC_Os11g11390 LOC_Os09g13680 LOC_Os06g40960 LOC_Os08g39500 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g51320.1 |
| Rice Genome Annotation | LOC_Os04g51320.1 |
| Ricechip | LOC_Os04g51320.1 |
| KEGG | osa:4336888 dosa:Os04t0602300-01 |
| Entrez-Gene | 4336888 |