RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g51340.1 View Network Show in Genome Browser |
| Other Names | Os04g0602500 |
| Description | pectinacetylesterase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30405474-30409396 Nucleotide Length: 1401 |
| Protein-coding | LOC_Os04g51340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g36190 LOC_Os02g32770 LOC_Os01g50490 LOC_Os02g36150 |
| Downstream Genes | LOC_Os10g16974 LOC_Os09g26940 LOC_Os09g08990 LOC_Os05g01950 LOC_Os09g26960 LOC_Os04g57800 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g51340.1 |
| Rice Genome Annotation | LOC_Os04g51340.1 |
| Ricechip | LOC_Os04g51340.1 |
| KEGG | osa:4336890 dosa:Os04t0602500-01 |
| Entrez-Gene | 4336890 |