RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g51400.1 View Network Show in Genome Browser |
| Other Names | Os04g0603200 |
| Description | zinc finger, C3HC4 type domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30439467-30442796 Nucleotide Length: 1104 |
| Protein-coding | LOC_Os04g51400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005488 | binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g53890 LOC_Os03g60920 LOC_Os02g35060 LOC_Os01g46926 LOC_Os01g37560 LOC_Os02g16040 LOC_Os01g60410 LOC_Os01g60360 LOC_Os02g02830 |
| Downstream Genes | LOC_Os04g51404 LOC_Os06g06730 LOC_Os12g41830 LOC_Os07g05650 LOC_Os04g57220 LOC_Os06g30970 LOC_Os05g30130 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR530-5p |
| Reference | |
|---|---|
| PubMed | 19957018 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g51400.1 |
| Rice Genome Annotation | LOC_Os04g51400.1 |
| Ricechip | LOC_Os04g51400.1 |
| KEGG | osa:4336897 dosa:Os04t0603200-01 |
| Entrez-Gene | 4336897 |