RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g51700.1 View Network Show in Genome Browser |
| Other Names | Os04g0606450 |
| Description | DNA ligase I, ATP-dependent family protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30629646-30638800 Nucleotide Length: 1707 |
| Protein-coding | LOC_Os04g51700 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g53000 LOC_Os03g63920 LOC_Os01g71256 LOC_Os04g43300 LOC_Os03g49210 LOC_Os02g32860 LOC_Os03g24339 LOC_Os01g18670 LOC_Os01g50160 LOC_Os01g50100 LOC_Os01g50080 More.. |
| Downstream Genes | LOC_Os07g08729 LOC_Os10g34750 LOC_Os06g13020 LOC_Os11g11070 LOC_Os11g08660 LOC_Os08g01054 LOC_Os07g46180 LOC_Os04g54340 LOC_Os07g49010 LOC_Os06g05190 LOC_Os08g31930 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g51700.1 |
| Rice Genome Annotation | LOC_Os04g51700.1 |
| Ricechip | LOC_Os04g51700.1 |
| KEGG | osa:9269006 dosa:Os04t0606450-01 |
| Entrez-Gene | 9269006 |