RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g51830.1 View Network Show in Genome Browser |
| Other Names | Os04g0607600 |
| Description | OsHKT1;4 - Na+ transporter, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30734183-30739334 Nucleotide Length: 1503 |
| Protein-coding | LOC_Os04g51830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g51820 LOC_Os02g07830 LOC_Os03g54100 LOC_Os03g53720 LOC_Os03g39710 LOC_Os01g38670 LOC_Os03g17790 LOC_Os03g48310 LOC_Os02g55400 LOC_Os03g01120 LOC_Os03g08560 More.. |
| Downstream Genes | LOC_Os08g25200 LOC_Os07g01810 LOC_Os10g28640 LOC_Os05g19500 LOC_Os06g38470 LOC_Os09g11450 LOC_Os04g56160 LOC_Os12g44150 LOC_Os07g09340 LOC_Os08g25060 LOC_Os05g25550 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR529b |
| Reference | |
|---|---|
| PubMed | 22808069 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g51830.1 |
| Rice Genome Annotation | LOC_Os04g51830.1 |
| Ricechip | LOC_Os04g51830.1 |
| KEGG | osa:4336927 dosa:Os04t0607600-01 |
| Entrez-Gene | 4336927 |