RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g51880.1 View Network Show in Genome Browser |
| Other Names | Os04g0608100 |
| Description | GHMP kinases ATP-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30764486-30769716 Nucleotide Length: 1293 |
| Protein-coding | LOC_Os04g51880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g36600 LOC_Os04g38530 LOC_Os04g38540 LOC_Os03g26430 LOC_Os03g02410 LOC_Os02g01920 LOC_Os02g01760 LOC_Os01g66170 LOC_Os02g05330 LOC_Os01g72340 LOC_Os03g61710 More.. |
| Downstream Genes | LOC_Os07g07550 LOC_Os09g15420 LOC_Os10g06720 LOC_Os09g35800 LOC_Os10g18220 LOC_Os07g46220 LOC_Os07g05650 LOC_Os08g03570 LOC_Os08g28730 LOC_Os04g52730 LOC_Os07g04690 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00052 rn00520 rn01100 rn01110 |
| Metacyc Pathways | PWY-3821 GALACTMETAB-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g51880.1 |
| Rice Genome Annotation | LOC_Os04g51880.1 |
| Ricechip | LOC_Os04g51880.1 |
| KEGG | osa:4336928 dosa:Os04t0608100-01 |
| Entrez-Gene | 4336928 |