RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g52000.1 View Network Show in Genome Browser |
| Other Names | Os04g0609600 |
| Description | protein phosphatase 2C, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30875218-30879563 Nucleotide Length: 966 |
| Protein-coding | LOC_Os04g52000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g30040 LOC_Os03g53880 LOC_Os01g02460 LOC_Os02g34750 LOC_Os02g17910 LOC_Os03g01850 LOC_Os01g04490 LOC_Os01g60060 LOC_Os04g06210 LOC_Os02g41500 LOC_Os04g43730 More.. |
| Downstream Genes | LOC_Os07g47950 LOC_Os12g38860 LOC_Os10g02250 LOC_Os09g16950 LOC_Os10g01390 LOC_Os10g09550 LOC_Os06g03610 LOC_Os10g06090 LOC_Os09g37230 LOC_Os10g02284 LOC_Os05g51560 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g52000.1 |
| Rice Genome Annotation | LOC_Os04g52000.1 |
| Ricechip | LOC_Os04g52000.1 |
| KEGG | osa:4336940 dosa:Os04t0609600-01 |
| Entrez-Gene | 4336940 |