RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g52230.1 View Network Show in Genome Browser |
| Other Names | Os04g0611800 |
| Description | ent-kaurene synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31026617-31031248 Nucleotide Length: 2442 |
| Protein-coding | LOC_Os04g52230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g13560 LOC_Os04g45070 LOC_Os03g62090 LOC_Os01g63270 LOC_Os01g53240 LOC_Os03g59340 LOC_Os04g09720 LOC_Os01g43910 LOC_Os04g51330 LOC_Os04g15690 |
| Downstream Genes | LOC_Os09g25900 LOC_Os06g42850 LOC_Os06g42020 LOC_Os07g10770 LOC_Os10g30290 LOC_Os05g32710 LOC_Os07g45060 LOC_Os05g45590 LOC_Os12g29550 LOC_Os11g05390 LOC_Os07g14850 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00904 rn01100 rn01110 |
| Metacyc Pathways | PWY-5032 |
| Reference | |
|---|---|
| PubMed | 15075394 15668792 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g52230.1 |
| Rice Genome Annotation | LOC_Os04g52230.1 |
| Ricechip | LOC_Os04g52230.1 |
| KEGG | osa:4336960 dosa:Os04t0611800-00 |
| Entrez-Gene | 4336960 |