RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g52690.1 View Network Show in Genome Browser |
| Other Names | Os04g0617600 |
| Description | AAA family ATPase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31364043-31369487 Nucleotide Length: 2823 |
| Protein-coding | LOC_Os04g52690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g16670 LOC_Os02g53500 LOC_Os04g48060 LOC_Os03g19350 LOC_Os02g04100 LOC_Os01g63710 LOC_Os01g47070 LOC_Os02g07750 LOC_Os04g27060 LOC_Os04g26910 LOC_Os02g12380 More.. |
| Downstream Genes | LOC_Os08g44240 LOC_Os08g39080 LOC_Os08g41730 LOC_Os09g32800 LOC_Os05g44310 LOC_Os06g38470 LOC_Os07g42632 LOC_Os07g48960 LOC_Os05g32630 LOC_Os07g19040 LOC_Os05g03910 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g52690.1 |
| Rice Genome Annotation | LOC_Os04g52690.1 |
| Ricechip | LOC_Os04g52690.1 |
| KEGG | osa:4337006 dosa:Os04t0617600-01 |
| Entrez-Gene | 4337006 |