RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g52730.1 View Network Show in Genome Browser |
| Other Names | Os04g0618200 |
| Description | NAD dependent epimerase/dehydratase family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31403365-31407281 Nucleotide Length: 1176 |
| Protein-coding | LOC_Os04g52730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g51880 LOC_Os03g61710 LOC_Os02g04840 LOC_Os03g17740 LOC_Os02g36600 LOC_Os04g38530 LOC_Os04g38540 |
| Downstream Genes | LOC_Os07g48100 LOC_Os12g26290 LOC_Os06g48940 LOC_Os09g33680 LOC_Os10g06720 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00051 rn00520 rn01100 rn01110 rn00052 |
| Metacyc Pathways | PWY-2582 DTDPRHAMSYN-PWY UDPNACETYLGALSYN-PWY PWY-66 GDPRHAMSYN-PWY PWY-3821 P61-PWY GALACTMETAB-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g52730.1 |
| Rice Genome Annotation | LOC_Os04g52730.1 |
| Ricechip | LOC_Os04g52730.1 |
| KEGG | osa:4337011 dosa:Os04t0618200-01 |
| Entrez-Gene | 4337011 |