RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g52850.1 View Network Show in Genome Browser |
| Other Names | Os04g0619500 |
| Description | OTU-like cysteine protease family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31474374-31477433 Nucleotide Length: 972 |
| Protein-coding | LOC_Os04g52850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g06890 LOC_Os03g22350 LOC_Os04g32970 LOC_Os02g07210 LOC_Os03g64219 LOC_Os01g59500 LOC_Os03g55330 LOC_Os01g55974 LOC_Os03g46640 LOC_Os01g08770 LOC_Os03g50380 More.. |
| Downstream Genes | LOC_Os09g19560 LOC_Os06g45850 LOC_Os12g01060 LOC_Os11g01074 LOC_Os06g44060 LOC_Os04g57480 LOC_Os10g26660 LOC_Os07g43980 LOC_Os08g42540 LOC_Os04g58830 LOC_Os12g04010 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6252 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g52850.1 |
| Rice Genome Annotation | LOC_Os04g52850.1 |
| Ricechip | LOC_Os04g52850.1 |
| KEGG | osa:4337022 dosa:Os04t0619500-01 |
| Entrez-Gene | 4337022 |