RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g52900.2 View Network Show in Genome Browser |
| Other Names | Os04g0620066,Os04g0620000 |
| Description | ABC transporter family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31502940-31514308 Nucleotide Length: 4248 |
| Protein-coding | LOC_Os04g52900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g32950 LOC_Os03g01600 LOC_Os02g07160 LOC_Os03g04240 LOC_Os04g47190 LOC_Os03g12890 LOC_Os03g04250 LOC_Os02g32690 LOC_Os03g05760 LOC_Os01g42410 LOC_Os01g42380 More.. |
| Downstream Genes | LOC_Os05g48450 LOC_Os10g40200 LOC_Os12g05090 LOC_Os11g05090 LOC_Os09g16380 LOC_Os07g38600 LOC_Os09g04730 LOC_Os09g29190 LOC_Os04g58110 LOC_Os12g13720 LOC_Os06g22140 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g52900.2 |
| Rice Genome Annotation | LOC_Os04g52900.2 |
| Ricechip | LOC_Os04g52900.2 |
| KEGG | osa:4337027 dosa:Os04t0620066-00dosa:Os04t0620000-01 |