RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g52940.1 View Network Show in Genome Browser |
| Other Names | Os04g0620500,Os04g0620400 |
| Description | SIT4 phosphatase-associated protein domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31531905-31541913 Nucleotide Length: 2331 |
| Protein-coding | LOC_Os04g52940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g49690 LOC_Os01g40340 LOC_Os04g52200 LOC_Os02g50370 LOC_Os03g52470 LOC_Os03g61200 LOC_Os03g22890 LOC_Os03g05720 LOC_Os01g65220 LOC_Os03g18410 LOC_Os02g02360 More.. |
| Downstream Genes | LOC_Os05g51490 LOC_Os10g25110 LOC_Os06g01980 LOC_Os06g03940 LOC_Os07g10350 LOC_Os05g22920 LOC_Os05g05450 LOC_Os06g40120 LOC_Os05g28320 LOC_Os12g29660 LOC_Os07g16950 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2093-3p osa-miR1424 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g52940.1 |
| Rice Genome Annotation | LOC_Os04g52940.1 |
| Ricechip | LOC_Os04g52940.1 |
| KEGG | osa:4337030 osa:4337029 dosa:Os04t0620500-01dosa:Os04t0620400-01 |
| Entrez-Gene | 4337030 |