RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53190.1 View Network Show in Genome Browser |
| Other Names | Os04g0623300 |
| Description | CPuORF12 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31669055-31674598 Nucleotide Length: 1455 |
| Protein-coding | LOC_Os04g53190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g18320 LOC_Os03g08410 LOC_Os04g41260 LOC_Os02g17500 LOC_Os04g51330 LOC_Os01g12580 LOC_Os02g58160 |
| Downstream Genes | LOC_Os07g43370 LOC_Os07g10490 LOC_Os12g16650 LOC_Os07g41600 LOC_Os07g05720 LOC_Os07g40620 LOC_Os12g15470 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN HEMEBIOSYNTHESISII |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53190.1 |
| Rice Genome Annotation | LOC_Os04g53190.1 |
| Ricechip | LOC_Os04g53190.1 |
| KEGG | osa:4337046 dosa:Os04t0623300-01 |
| Entrez-Gene | 4337046 |