RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53200.1 View Network Show in Genome Browser |
| Other Names | Os04g0623400 |
| Description | exonuclease, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31678907-31683944 Nucleotide Length: 849 |
| Protein-coding | LOC_Os04g53200 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g26660 LOC_Os02g47920 LOC_Os01g17279 LOC_Os04g23830 LOC_Os01g43080 LOC_Os01g27750 |
| Downstream Genes | LOC_Os08g28980 LOC_Os04g55700 LOC_Os12g08740 LOC_Os11g32290 LOC_Os12g34874 LOC_Os07g22700 LOC_Os07g45300 LOC_Os07g34640 LOC_Os11g08330 LOC_Os12g37400 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53200.1 |
| Rice Genome Annotation | LOC_Os04g53200.1 |
| Ricechip | LOC_Os04g53200.1 |
| KEGG | osa:4337047 dosa:Os04t0623400-01 |
| Entrez-Gene | 4337047 |