RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53210.3 View Network Show in Genome Browser |
| Other Names | Os04g0623500 |
| Description | hydroxyacid oxidase 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31688717-31692592 Nucleotide Length: 1098 |
| Protein-coding | LOC_Os04g53210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48960 LOC_Os01g65260 LOC_Os03g20470 LOC_Os03g08280 LOC_Os02g32660 LOC_Os03g18130 LOC_Os04g52280 LOC_Os03g56800 LOC_Os01g42650 LOC_Os02g13640 LOC_Os02g50350 More.. |
| Downstream Genes | LOC_Os06g15420 LOC_Os12g03720 LOC_Os11g03900 LOC_Os08g20270 LOC_Os05g35580 LOC_Os06g15990 LOC_Os05g34770 LOC_Os10g29470 LOC_Os11g48080 LOC_Os07g01020 LOC_Os08g37874 More.. |
| Reference | |
|---|---|
| PubMed | 22761858 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53210.3 |
| Rice Genome Annotation | LOC_Os04g53210.3 |
| Ricechip | LOC_Os04g53210.3 |
| KEGG | osa:4337048 dosa:Os04t0623500-02 |
| Entrez-Gene | 4337048 |