RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53220.1 View Network Show in Genome Browser |
| Other Names | Os04g0623700 |
| Description | signal recognition particle 14 kDa protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31697210-31700289 Nucleotide Length: 399 |
| Protein-coding | LOC_Os04g53220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g50990 LOC_Os02g47140 LOC_Os03g50620 LOC_Os03g21914 LOC_Os01g59990 LOC_Os02g27760 LOC_Os02g06700 LOC_Os03g59310 LOC_Os01g67134 LOC_Os03g08450 LOC_Os03g18580 More.. |
| Downstream Genes | LOC_Os07g10660 LOC_Os06g14550 LOC_Os07g12250 LOC_Os05g40820 LOC_Os11g05562 LOC_Os08g44480 LOC_Os07g10720 LOC_Os09g39540 LOC_Os05g48310 LOC_Os05g48220 LOC_Os10g13800 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2275c |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53220.1 |
| Rice Genome Annotation | LOC_Os04g53220.1 |
| Ricechip | LOC_Os04g53220.1 |
| KEGG | osa:4337050 dosa:Os04t0623700-01 |
| Entrez-Gene | 4337050 |