RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53310.1 View Network Show in Genome Browser |
| Other Names | Os04g0624600 |
| Description | soluble starch synthase 3, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31750955-31759581 Nucleotide Length: 3651 |
| Protein-coding | LOC_Os04g53310 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g52460 LOC_Os01g44220 LOC_Os02g32660 LOC_Os01g63270 LOC_Os04g33460 LOC_Os03g55090 LOC_Os03g32270 LOC_Os02g54510 LOC_Os03g31550 LOC_Os03g24030 |
| Downstream Genes | LOC_Os08g25734 LOC_Os09g12660 LOC_Os07g13980 LOC_Os05g50380 LOC_Os06g51084 LOC_Os06g26234 LOC_Os05g32710 LOC_Os09g29404 LOC_Os08g40930 LOC_Os07g46790 LOC_Os07g43390 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 rn01110 |
| Metacyc Pathways | PWY-622 GLYCOGENSYNTH-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53310.1 |
| Rice Genome Annotation | LOC_Os04g53310.1 |
| Ricechip | LOC_Os04g53310.1 |
| KEGG | osa:4337056 dosa:Os04t0624600-01 |
| Entrez-Gene | 4337056 |