RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53400.1 View Network Show in Genome Browser |
| Other Names | Os04g0625500 |
| Description | MBTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31809708-31810835 Nucleotide Length: 1128 |
| Protein-coding | LOC_Os04g53400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g39290 LOC_Os04g14190 LOC_Os04g14110 LOC_Os01g56490 LOC_Os02g16620 |
| Downstream Genes | LOC_Os12g30540 LOC_Os05g23950 LOC_Os12g08070 LOC_Os11g36470 LOC_Os07g06950 LOC_Os06g30750 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53400.1 |
| Rice Genome Annotation | LOC_Os04g53400.1 |
| Ricechip | LOC_Os04g53400.1 |
| KEGG | dosa:Os04t0625500-00 |