RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53490.1 View Network Show in Genome Browser |
| Other Names | Os04g0626400 |
| Description | OsCHL Chloroplastic lipocalin, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 31848493-31850868 Nucleotide Length: 1029 |
| Protein-coding | LOC_Os04g53490 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g34040 LOC_Os04g31040 LOC_Os01g05080 LOC_Os04g51300 LOC_Os02g58790 LOC_Os01g65460 LOC_Os01g70400 LOC_Os02g07760 LOC_Os02g55630 LOC_Os02g53400 LOC_Os02g34810 More.. |
| Downstream Genes | LOC_Os10g35810 LOC_Os07g42960 LOC_Os08g32930 LOC_Os08g29370 LOC_Os04g55180 LOC_Os05g42100 LOC_Os12g24580 LOC_Os07g15670 LOC_Os07g32060 LOC_Os07g32020 LOC_Os07g32010 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53490.1 |
| Rice Genome Annotation | LOC_Os04g53490.1 |
| Ricechip | LOC_Os04g53490.1 |
| KEGG | osa:4337069 dosa:Os04t0626400-01 |
| Entrez-Gene | 4337069 |