RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53740.1 View Network Show in Genome Browser |
| Other Names | Os04g0629500 |
| Description | thioredoxin, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32019370-32022727 Nucleotide Length: 402 |
| Protein-coding | LOC_Os04g53740 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g35900 LOC_Os04g31340 LOC_Os04g35290 LOC_Os03g55820 LOC_Os02g01010 LOC_Os01g42960 LOC_Os01g01160 LOC_Os03g04440 LOC_Os01g65380 LOC_Os03g51030 LOC_Os01g12810 More.. |
| Downstream Genes | LOC_Os04g58330 LOC_Os05g47930 LOC_Os09g27830 LOC_Os12g01449 LOC_Os06g24540 LOC_Os12g43660 LOC_Os11g01439 LOC_Os11g47730 LOC_Os06g51480 LOC_Os07g37040 LOC_Os05g35460 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2093-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53740.1 |
| Rice Genome Annotation | LOC_Os04g53740.1 |
| Ricechip | LOC_Os04g53740.1 |
| KEGG | osa:4337091 dosa:Os04t0629500-01 |
| Entrez-Gene | 4337091 |