RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g53930.1 View Network Show in Genome Browser |
| Other Names | Os04g0631100 |
| Description | organic cation transporter protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32137818-32141183 Nucleotide Length: 1179 |
| Protein-coding | LOC_Os04g53930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g11440 LOC_Os03g11010 LOC_Os04g43210 LOC_Os01g16260 LOC_Os01g17214 LOC_Os04g41460 LOC_Os03g54160 LOC_Os02g36924 LOC_Os02g49840 LOC_Os04g23910 LOC_Os02g44730 More.. |
| Downstream Genes | LOC_Os09g17840 LOC_Os09g17830 LOC_Os07g05640 LOC_Os10g42960 LOC_Os12g39180 LOC_Os12g03860 LOC_Os11g05390 LOC_Os11g04030 LOC_Os11g04020 LOC_Os11g04104 LOC_Os12g03899 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g53930.1 |
| Rice Genome Annotation | LOC_Os04g53930.1 |
| Ricechip | LOC_Os04g53930.1 |
| KEGG | osa:4337103 dosa:Os04t0631100-01 |
| Entrez-Gene | 4337103 |