RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54110.1 View Network Show in Genome Browser |
| Other Names | Os04g0633600 |
| Description | ARK3, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32238374-32242528 Nucleotide Length: 2064 |
| Protein-coding | LOC_Os04g54110 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009875 | pollen-pistil interaction | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0030246 | carbohydrate binding | Molecular Function | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os02g15594 LOC_Os02g55560 LOC_Os04g37904 LOC_Os04g52000 LOC_Os03g07300 LOC_Os04g31270 LOC_Os02g08364 LOC_Os03g18150 LOC_Os01g49330 LOC_Os02g35910 More.. |
| Downstream Genes | LOC_Os06g48300 LOC_Os07g32380 LOC_Os06g33549 LOC_Os04g56450 LOC_Os06g44210 LOC_Os10g39540 LOC_Os06g33530 LOC_Os09g30100 LOC_Os09g32810 LOC_Os09g38550 LOC_Os05g50970 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54110.1 |
| Rice Genome Annotation | LOC_Os04g54110.1 |
| Ricechip | LOC_Os04g54110.1 |
| KEGG | dosa:Os04t0633600-00 |