RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54390.1 View Network Show in Genome Browser |
| Other Names | Os04g0636400 |
| Description | nuclease PA3, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32362968-32365039 Nucleotide Length: 918 |
| Protein-coding | LOC_Os04g54390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59920 LOC_Os02g02320 LOC_Os03g51980 LOC_Os03g25440 |
| Downstream Genes | LOC_Os11g34210 LOC_Os12g19549 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5526 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54390.1 |
| Rice Genome Annotation | LOC_Os04g54390.1 |
| Ricechip | LOC_Os04g54390.1 |
| KEGG | osa:9269929 dosa:Os04t0636400-01 |
| Entrez-Gene | 9269929 |