RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54420.1 View Network Show in Genome Browser |
| Other Names | Os04g0636700 |
| Description | protein of unknown function, DUF618 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32378706-32382044 Nucleotide Length: 1587 |
| Protein-coding | LOC_Os04g54420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g24339 LOC_Os02g08360 LOC_Os01g65220 LOC_Os03g61750 LOC_Os03g17590 LOC_Os03g46750 LOC_Os03g18350 |
| Downstream Genes | LOC_Os09g39270 LOC_Os08g08830 LOC_Os07g46180 LOC_Os05g06260 LOC_Os11g05570 LOC_Os05g32580 LOC_Os09g22540 LOC_Os05g28510 LOC_Os07g03070 LOC_Os09g02284 LOC_Os09g29980 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5522 osa-miR1846a-5p osa-miR1846b-5p osa-miR1846c-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54420.1 |
| Rice Genome Annotation | LOC_Os04g54420.1 |
| Ricechip | LOC_Os04g54420.1 |
| KEGG | osa:4337145 dosa:Os04t0636700-01 |
| Entrez-Gene | 4337145 |