RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54440.3 View Network Show in Genome Browser |
| Other Names | Os04g0636900 |
| Description | RNA binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32389071-32392487 Nucleotide Length: 1548 |
| Protein-coding | LOC_Os04g54440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g54430 LOC_Os01g51300 LOC_Os02g15310 LOC_Os04g40420 LOC_Os02g52140 LOC_Os04g31620 LOC_Os02g54690 LOC_Os03g60930 LOC_Os03g15890 LOC_Os03g58720 LOC_Os02g43560 More.. |
| Downstream Genes | LOC_Os05g13650 LOC_Os11g45590 LOC_Os06g50890 LOC_Os05g01540 LOC_Os11g41820 LOC_Os09g03610 LOC_Os05g24970 LOC_Os09g37720 LOC_Os09g33870 LOC_Os12g38430 LOC_Os09g29980 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54440.3 |
| Rice Genome Annotation | LOC_Os04g54440.3 |
| Ricechip | LOC_Os04g54440.3 |
| KEGG | osa:4337147 dosa:Os04t0636900-01 |
| Entrez-Gene | 4337147 |