RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g54474.1 View Network Show in Genome Browser
Other Names	Os04g0637000
Description	transcription factor, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 32403336-32412065 Nucleotide Length: 1194
Protein-coding	LOC_Os04g54474

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g58250 LOC_Os03g21800 LOC_Os02g49560 LOC_Os02g03960 LOC_Os02g16680 LOC_Os01g08120 LOC_Os02g10860 LOC_Os01g64730 LOC_Os03g46440 LOC_Os01g56200 LOC_Os01g09800 More..
Downstream Genes	LOC_Os12g37410 LOC_Os11g05640 LOC_Os09g34060 LOC_Os08g43090 LOC_Os05g49420 LOC_Os05g34050 LOC_Os12g06520 LOC_Os06g50310 LOC_Os06g41770

miRNA Regulations
miRNAs	osa-miR3979-5p

Reference
PubMed	18065552 19635799

Database Links
Gramene	LOC_Os04g54474.1
Rice Genome Annotation	LOC_Os04g54474.1
Ricechip	LOC_Os04g54474.1
KEGG	osa:9270267 dosa:Os04t0637000-01
Entrez-Gene	9270267