RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54474.3 View Network Show in Genome Browser |
| Other Names | Os04g0637000 |
| Description | transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32409414-32412065 Nucleotide Length: 1113 |
| Protein-coding | LOC_Os04g54474 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g58250 LOC_Os03g21800 LOC_Os02g49560 LOC_Os02g03960 LOC_Os02g16680 LOC_Os01g08120 LOC_Os02g10860 LOC_Os01g64730 LOC_Os03g46440 LOC_Os01g56200 LOC_Os01g09800 More.. |
| Downstream Genes | LOC_Os12g37410 LOC_Os11g05640 LOC_Os09g34060 LOC_Os08g43090 LOC_Os05g49420 LOC_Os05g34050 LOC_Os12g06520 LOC_Os06g50310 LOC_Os06g41770 |
| Reference | |
|---|---|
| PubMed | 18065552 19635799 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54474.3 |
| Rice Genome Annotation | LOC_Os04g54474.3 |
| Ricechip | LOC_Os04g54474.3 |
| KEGG | osa:9270267 dosa:Os04t0637000-01 |
| Entrez-Gene | 9270267 |