RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54500.1 View Network Show in Genome Browser |
| Other Names | Os04g0637400 |
| Description | POLGAMMA2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32418363-32423997 Nucleotide Length: 2076 |
| Protein-coding | LOC_Os04g54500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g60180 LOC_Os01g53150 LOC_Os01g25880 LOC_Os03g24844 LOC_Os03g24770 LOC_Os03g13000 LOC_Os04g42320 LOC_Os02g40000 LOC_Os02g18450 LOC_Os01g54910 LOC_Os04g35290 More.. |
| Downstream Genes | LOC_Os06g43610 LOC_Os08g21330 LOC_Os10g12354 LOC_Os05g28470 LOC_Os05g28460 LOC_Os10g42240 LOC_Os06g01400 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54500.1 |
| Rice Genome Annotation | LOC_Os04g54500.1 |
| Ricechip | LOC_Os04g54500.1 |
| KEGG | osa:4337150 dosa:Os04t0637400-01 |
| Entrez-Gene | 4337150 |