RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54630.1 View Network Show in Genome Browser |
| Other Names | Os04g0639200 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32481117-32481777 Nucleotide Length: 585 |
| Protein-coding | LOC_Os04g54630 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07190 LOC_Os03g61130 LOC_Os02g04170 LOC_Os04g20164 |
| Downstream Genes | LOC_Os08g42960 LOC_Os05g33270 LOC_Os06g49990 LOC_Os09g34280 LOC_Os05g50930 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54630.1 |
| Rice Genome Annotation | LOC_Os04g54630.1 |
| Ricechip | LOC_Os04g54630.1 |
| KEGG | osa:9269237 dosa:Os04t0639200-01 |
| Entrez-Gene | 9269237 |