RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54790.1 View Network Show in Genome Browser |
| Other Names | Os04g0640500 |
| Description | ELMO/CED-12 family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32574405-32581684 Nucleotide Length: 2163 |
| Protein-coding | LOC_Os04g54790 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g74520 LOC_Os04g42870 LOC_Os01g51530 LOC_Os01g31680 LOC_Os02g10430 LOC_Os01g67730 LOC_Os03g43430 LOC_Os03g19680 LOC_Os03g19420 |
| Downstream Genes | LOC_Os08g21590 LOC_Os06g43610 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR531b |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54790.1 |
| Rice Genome Annotation | LOC_Os04g54790.1 |
| Ricechip | LOC_Os04g54790.1 |
| KEGG | osa:4337164 dosa:Os04t0640500-01 |
| Entrez-Gene | 4337164 |