RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54800.3 View Network Show in Genome Browser |
| Other Names | Os04g0640600 |
| Description | shikimate kinase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32582133-32585724 Nucleotide Length: 570 |
| Protein-coding | LOC_Os04g54800 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g46930 LOC_Os03g19870 LOC_Os02g12900 LOC_Os03g29470 LOC_Os01g74650 LOC_Os03g53650 LOC_Os04g08350 LOC_Os01g59920 LOC_Os01g27750 LOC_Os01g48960 LOC_Os01g54020 More.. |
| Downstream Genes | LOC_Os09g36800 LOC_Os06g36840 LOC_Os08g01770 LOC_Os07g22950 LOC_Os06g36880 LOC_Os06g05700 LOC_Os06g05690 LOC_Os06g36830 LOC_Os12g42980 LOC_Os08g19140 LOC_Os06g36850 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | ARO-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54800.3 |
| Rice Genome Annotation | LOC_Os04g54800.3 |
| Ricechip | LOC_Os04g54800.3 |
| KEGG | osa:4337165 dosa:Os04t0640600-01 |
| Entrez-Gene | 4337165 |