RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54810.1 View Network Show in Genome Browser |
| Other Names | Os04g0640700 |
| Description | beta-D-xylosidase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32588940-32595893 Nucleotide Length: 2298 |
| Protein-coding | LOC_Os04g54810 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08790 LOC_Os04g42620 LOC_Os01g09860 LOC_Os01g11010 LOC_Os02g16500 LOC_Os02g09930 LOC_Os01g59150 LOC_Os01g73980 LOC_Os03g12250 LOC_Os03g49610 LOC_Os03g14610 More.. |
| Downstream Genes | LOC_Os06g34120 LOC_Os07g38730 LOC_Os05g02820 LOC_Os05g46550 LOC_Os07g01860 LOC_Os06g36050 LOC_Os05g01810 LOC_Os05g45930 LOC_Os07g40940 LOC_Os09g32964 LOC_Os07g45060 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1848 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54810.1 |
| Rice Genome Annotation | LOC_Os04g54810.1 |
| Ricechip | LOC_Os04g54810.1 |
| KEGG | osa:4337166 dosa:Os04t0640700-01 |
| Entrez-Gene | 4337166 |