RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
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Locus Name | LOC_Os04g54840.1 View Network Show in Genome Browser |
Other Names | Os04g0641000 |
Description | DNA-directed RNA polymerase subunit, putative, expressed |
Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32609882-32618950 Nucleotide Length: 3759 |
Protein-coding | LOC_Os04g54840 |
Gene Ontology Classification | ||||
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GO | Name | Type | Code | |
GO:0009058 | biosynthetic process | Biological Process | IEA | |
GO:0009987 | cellular process | Biological Process | IEA | |
GO:0006259 | DNA metabolic process | Biological Process | IEA | |
GO:0008152 | metabolic process | Biological Process | IEA | |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
GO:0003677 | DNA binding | Molecular Function | IEA | |
GO:0005515 | protein binding | Molecular Function | IEA | |
GO:0016740 | transferase activity | Molecular Function | IEA | |
GO:0005622 | intracellular | Cellular Component | IEA | |
GO:0005654 | nucleoplasm | Cellular Component | IEA | |
GO:0005634 | nucleus | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
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Upstream Genes | LOC_Os04g41490 LOC_Os01g73430 LOC_Os03g60400 LOC_Os01g61814 LOC_Os02g05880 LOC_Os04g16830 LOC_Os02g24614 LOC_Os03g52400 LOC_Os01g47330 LOC_Os03g17580 LOC_Os01g64090 More.. |
Downstream Genes | LOC_Os05g05860 LOC_Os12g01710 LOC_Os06g40950 LOC_Os11g29190 LOC_Os08g44450 LOC_Os05g49320 LOC_Os05g48050 LOC_Os06g35470 LOC_Os05g32220 LOC_Os08g44380 LOC_Os07g43310 More.. |
Database Links | |
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Gramene | LOC_Os04g54840.1 |
Rice Genome Annotation | LOC_Os04g54840.1 |
Ricechip | LOC_Os04g54840.1 |
KEGG | osa:4337169 dosa:Os04t0641000-01 |
Entrez-Gene | 4337169 |