RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54870.1 View Network Show in Genome Browser |
| Other Names | Os04g0641400,Os04g0641350 |
| Description | RNA recognition motif containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32633163-32637837 Nucleotide Length: 771 |
| Protein-coding | LOC_Os04g54870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g73990 LOC_Os03g64320 LOC_Os02g13980 LOC_Os01g64490 LOC_Os01g51840 LOC_Os02g45310 LOC_Os03g04260 LOC_Os03g59210 |
| Downstream Genes | LOC_Os06g38960 LOC_Os09g27700 LOC_Os07g05470 LOC_Os06g30950 LOC_Os09g20880 LOC_Os05g01810 LOC_Os04g58130 LOC_Os09g13650 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-4302 PWY-3781 AERESPDON-PWY ANARESPDON-PWY PWY-5083 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54870.1 |
| Rice Genome Annotation | LOC_Os04g54870.1 |
| Ricechip | LOC_Os04g54870.1 |
| KEGG | osa:4337172 dosa:Os04t0641400-02dosa:Os04t0641350-00 |
| Entrez-Gene | 4337172 |