RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54940.1 View Network Show in Genome Browser |
| Other Names | Os04g0642100 |
| Description | ATEB1A-like microtubule associated protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32684545-32687622 Nucleotide Length: 810 |
| Protein-coding | LOC_Os04g54940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009606 | tropism | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005856 | cytoskeleton | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g60040 LOC_Os02g48740 LOC_Os03g18980 LOC_Os01g54080 LOC_Os01g33080 LOC_Os03g51600 LOC_Os03g48140 LOC_Os04g38870 LOC_Os02g57220 LOC_Os02g36974 LOC_Os02g37580 More.. |
| Downstream Genes | LOC_Os11g14220 LOC_Os09g33986 LOC_Os07g38730 LOC_Os06g29350 LOC_Os09g06560 LOC_Os04g58830 LOC_Os08g33370 LOC_Os10g35580 LOC_Os05g13300 LOC_Os12g13950 LOC_Os08g28190 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54940.1 |
| Rice Genome Annotation | LOC_Os04g54940.1 |
| Ricechip | LOC_Os04g54940.1 |
| KEGG | osa:4337174 dosa:Os04t0642100-01 |
| Entrez-Gene | 4337174 |