RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g55040.2 View Network Show in Genome Browser |
| Other Names | Os04g0643100 |
| Description | vacuolar ATP synthase subunit D 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32732598-32733949 Nucleotide Length: 810 |
| Protein-coding | LOC_Os04g55040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g51380 LOC_Os02g07870 LOC_Os02g57854 LOC_Os01g46980 LOC_Os01g12260 LOC_Os03g14690 LOC_Os01g61780 LOC_Os03g05730 LOC_Os02g30630 LOC_Os04g53370 LOC_Os04g26841 More.. |
| Downstream Genes | LOC_Os06g37180 LOC_Os06g45120 LOC_Os07g36470 LOC_Os10g10500 LOC_Os05g40230 LOC_Os11g26910 LOC_Os10g30580 LOC_Os05g51530 LOC_Os10g17280 LOC_Os09g36830 LOC_Os05g25310 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g55040.2 |
| Rice Genome Annotation | LOC_Os04g55040.2 |
| Ricechip | LOC_Os04g55040.2 |
| KEGG | osa:4337176 dosa:Os04t0643100-01 |
| Entrez-Gene | 4337176 |