RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g55050.1 View Network Show in Genome Browser |
| Other Names | Os04g0643200 |
| Description | amidase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32736558-32739865 Nucleotide Length: 1458 |
| Protein-coding | LOC_Os04g55050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44820 LOC_Os04g35060 LOC_Os01g43030 LOC_Os04g54330 LOC_Os03g62110 LOC_Os04g54940 LOC_Os01g09750 LOC_Os04g01480 |
| Downstream Genes | LOC_Os11g34210 LOC_Os08g04280 LOC_Os11g36390 LOC_Os07g30980 LOC_Os06g49870 LOC_Os09g26870 LOC_Os08g41990 LOC_Os10g35580 |
| Pathways | |
|---|---|
| Metacyc Pathways | P345-PWY PWY6666-1 ARGDEG-V-PWY P344-PWY PWY-3161 PWY-5025 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g55050.1 |
| Rice Genome Annotation | LOC_Os04g55050.1 |
| Ricechip | LOC_Os04g55050.1 |
| KEGG | osa:4337177 dosa:Os04t0643200-00 |
| Entrez-Gene | 4337177 |