RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g55060.1 View Network Show in Genome Browser |
| Other Names | Os04g0643300 |
| Description | 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32741376-32746505 Nucleotide Length: 1227 |
| Protein-coding | LOC_Os04g55060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18590 LOC_Os02g30060 LOC_Os04g30760 LOC_Os04g36800 LOC_Os02g10320 LOC_Os03g63930 LOC_Os03g22950 LOC_Os03g39860 LOC_Os02g56860 LOC_Os03g26530 LOC_Os04g44920 More.. |
| Downstream Genes | LOC_Os12g13930 LOC_Os07g42420 LOC_Os06g09630 LOC_Os08g43580 LOC_Os12g34890 LOC_Os11g31900 LOC_Os09g36860 LOC_Os07g12150 LOC_Os05g31290 LOC_Os07g30790 LOC_Os11g25160 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 osa-miR2919 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00061 rn01100 |
| Metacyc Pathways | FASYN-ELONG-PWY FASYN-INITIAL-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g55060.1 |
| Rice Genome Annotation | LOC_Os04g55060.1 |
| Ricechip | LOC_Os04g55060.1 |
| KEGG | osa:4337178 dosa:Os04t0643300-01 |
| Entrez-Gene | 4337178 |