RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g55230.1 View Network Show in Genome Browser |
| Other Names | Os04g0645100 |
| Description | tetratricopeptide repeat domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32835169-32848481 Nucleotide Length: 5163 |
| Protein-coding | LOC_Os04g55230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g14040 LOC_Os02g18450 |
| Downstream Genes | LOC_Os08g06530 LOC_Os05g22730 LOC_Os11g47730 LOC_Os06g43600 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR399i osa-miR399j osa-miR399d osa-miR5832 |
| Reference | |
|---|---|
| PubMed | 20889913 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g55230.1 |
| Rice Genome Annotation | LOC_Os04g55230.1 |
| Ricechip | LOC_Os04g55230.1 |
| KEGG | osa:4337192 dosa:Os04t0645100-01 |
| Entrez-Gene | 4337192 |